Publications

Breeder Friendly Phenotyping

Matthew Reynolds, Scott Chapman, Leonardo Crespo-Herrera, Gemma Molero, Suchismita Mondal, Diego NL Pequeno, Francisco Pinto, Francisco J Pinera-Chavez, Jesse Poland, Carolina Rivera-Amado, Carolina Saint Pierre, Sivakumar Sukumaran

The word phenotyping can nowadays invoke visions of a drone or phenocart moving swiftly across research plots collecting high-resolution data sets on a wide array of traits.

Plant Science    |    01.18.2020

Improving grain yield, stress resilience and quality of bread wheat using large-scale genomics

Philomin Juliana, Jesse Poland, Julio Huerta-Espino, Sandesh Shrestha, José Crossa, Leonardo Crespo-Herrera, Fernando Henrique Toledo, Velu Govindan, Suchismita Mondal, Uttam Kumar, Sridhar Bhavani, Pawan K. Singh, Mandeep S. Randhawa, Xinyao He, Carlos Guzman, Susanne Dreisigacker, Matthew N. Rouse, Yue Jin, Paulino Pérez-Rodríguez, Osval A. Montesinos-López, Daljit Singh, Mohammad Mokhlesur Rahman, Felix Marza & Ravi Prakash Singh

Nature Genetics    |    09.23.2019

Reduced response diversity does not negatively impact wheat climate resilience

Rod J Snowdon, Andreas Stahl, Benjamin Wittkop, Wolfgang Friedt, Kai Voss-Fels, Frank Ordon, Matthias Frisch, Susanne Dreisigacker, Sarah J Hearne, Kirstin E Bett, Richard D Cuthbert, Alison R Bentley, Albrecht E Melchinger, Roberto Tuberosa, Peter Langridge, Cristobal Uauy, Mark E Sorrells, Jesse Poland, Curtis J Pozniak

Proceedings of the National Academy of Sciences    |    05.28.2019

Resistance gene cloning from a wild crop relative by sequence capture and association genetics

Sanu Arora, Burkhard Steuernagel, Kumar Gaurav, Sutha Chandramohan, Yunming Long, Oadi Matny, Ryan Johnson, Jacob Enk, Sambasivam Periyannan, Narinder Singh, M Asyraf Md Hatta, Naveenkumar Athiyannan, Jitender Cheema, Guotai Yu, Ngonidzashe Kangara, Sreya Ghosh, Les J Szabo, Jesse Poland, Harbans Bariana, Jonathan DG Jones, Alison R Bentley, Mick Ayliffe, Eric Olson, Steven S Xu, Brian J Steffenson, Evans Lagudah, Brande BH Wulff

Nature Biotechnology    |    02.04.2019

Shifting the limits in wheat research and breeding using a fully annotated reference genome

Rudi Appels, Kellye Eversole, Catherine Feuillet, Beat Keller, Jane Rogers, Nils Stein, Curtis J Pozniak, Frédéric Choulet, Assaf Distelfeld, Jesse Poland, Gil Ronen, Andrew G Sharpe, Curtis Pozniak, Omer Barad, Kobi Baruch, Gabriel Keeble-Gagnère, Martin Mascher, Gil Ben-Zvi, Ambre-Aurore Josselin, Axel Himmelbach, François Balfourier, Juan Gutierrez-Gonzalez, Matthew Hayden, ChuShin Koh, Gary Muehlbauer, Raj K Pasam, Etienne Paux, Philippe Rigault, Josquin Tibbits, Vijay Tiwari, Manuel Spannagl, Daniel Lang, Heidrun Gundlach, Georg Haberer, Klaus FX Mayer, Danara Ormanbekova, Verena Prade, Hana Šimková, Thomas Wicker, David Swarbreck, Hélène Rimbert, Marius Felder, Nicolas Guilhot, Gemy Kaithakottil, Jens Keilwagen, Philippe Leroy, Thomas Lux, Sven Twardziok, Luca Venturini, Angéla Juhász, Michael Abrouk, Iris Fischer, Cristobal Uauy, Philippa Borrill, Ricardo H Ramirez-Gonzalez, Dominique Arnaud, Smahane Chalabi, Boulos Chalhoub, Aron Cory, Raju Datla, Mark W Davey, John Jacobs, Stephen J Robinson, Burkhard Steuernagel, Fred van Ex, Brande BH Wulff, Moussa Benhamed, Abdelhafid Bendahmane, Lorenzo Concia, David Latrasse, Michael Alaux, Jan Bartoš, Arnaud Bellec, Hélène Berges, Jaroslav Doležel, Zeev Frenkel, Bikram Gill, Abraham Korol, Thomas Letellier, Odd-Arne Olsen, Kuldeep Singh, Miroslav Valárik, Edwin van der Vossen, Sonia Vautrin, Song Weining, LTC Chromosome, Tzion Fahima, Vladimir Glikson, Dina Raats, Jarmila Číhalíková, Helena Toegelová, Jan Vrána, Pierre Sourdille, Benoit Darrier, Delfina Barabaschi, Luigi Cattivelli, Pilar Hernandez, Sergio Galvez, Hikmet Budak, Jonathan DG Jones, Kamil Witek, Guotai Yu, Ian Small, Joanna Melonek, Ruonan Zhou, Tatiana Belova, Kostya Kanyuka, Robert King, Kirby Nilsen, Sean Walkowiak, Richard Cuthbert, Ron Knox, Krysta Wiebe, Daoquan Xiang, Antje Rohde, Timothy Golds, Jana Čížková, Bala Ani Akpinar, Sezgi Biyiklioglu, Liangliang Gao, Amidou N’Daiye, Marie Kubaláková, Jan Šafář, Françoise Alfama, Anne-Françoise Adam-Blondon, Raphael Flores, Claire Guerche, Mikaël Loaec, Hadi Quesneville, Janet Condie, Jennifer Ens, Ron Maclachlan, Yifang Tan, Adriana Alberti, Jean-Marc Aury, Valérie Barbe, Arnaud Couloux, Corinne Cruaud, Karine Labadie, Sophie Mangenot, Patrick Wincker, Gaganpreet Kaur, Mingcheng Luo, Sunish Sehgal, Parveen Chhuneja, Om Prakash Gupta, Suruchi Jindal, Parampreet Kaur, Palvi Malik, Priti Sharma

Science    |    08.17.2018

Resistance Gene Discovery and Cloning by Sequence Capture and Association Genetics

Arora, S., Steuernagel, B., Chandramohan, S., Long, Y., Matny, O., Johnson, R., Enk, J., Periyannan, S., Hatta, M. A. M., Athiyannan, N., Cheema, J., Yu, G., Kangara, N., Ghosh, S., Szabo, L. J., Poland, J., Bariana, H., Jones, J. D. G., Bentley, A. R., Ayliffe, M., Olson, E., Xu, S. S., Steffenson, B. J., Lagudah, E., & Wulff, B. B. H.

bioRxiv    |    01.15.2018

Construction of a Map-Based Reference Genome Sequence for Barley, Hordeum vulgare L.

Beier, S., Himmelbach, A., Colmsee, C., Zhang, X.-Q., Barrero, R. A., Zhang, Q., Li, L., Bayer, M., Bolser, D., Taudien, S., Groth, M., Felder, M., Hastie, A., Šimková, H., Staňková, H., Vrána, J., Chan, S., Muñoz-Amatriaín, M., Ounit, R., Wanamaker, S., Schmutzer, T., Aliyeva-Schnorr, L., Grasso, S., Tanskanen, J., Sampath, D., Heavens, D., Cao, S., Chapman, B., Dai, F., Han, Y., Li, H., Li, X., Lin, C., McCooke, J. K., Tan, C., Wang, S., Yin, S., Zhou, G., Poland, J. A., Bellgard, M. I., Houben, A., Doležel, J., Ayling, S., Lonardi, S., Langridge, P., Muehlbauer, G. J., Kersey, P., Clark, M. D., Caccamo, M., Schulman, A. H., Platzer, M., Close, T. J., Hansson, M., Zhang, G., Braumann, I., Li, C., Waugh, R., Scholz, U., Stein, N., & Mascher, M.

Scientific Data    |    04.27.2017

A Chromosome Conformation Capture Ordered Sequence of the Barley Genome

Mascher, M., Gundlach, H., Himmelbach, A., Beier, S., Twardziok, S. O., Wicker, T., Radchuk, V., Dockter, C., Hedley, P. E., Russell, J., Bayer, M., Ramsay, L., Liu, H., Haberer, G., Zhang, X.-Q., Zhang, Q., Barrero, R. A., Li, L., Taudien, S., Groth, M., Felder, M., Hastie, A., Šimková, H., Staňková, H., Vrána, J., Chan, S., Muñoz-Amatriaín, M., Ounit, R., Wanamaker, S., Bolser, D., Colmsee, C., Schmutzer, T., Aliyeva-Schnorr, L., Grasso, S., Tanskanen, J., Chailyan, A., Sampath, D., Heavens, D., Clissold, L., Cao, S., Chapman, B., Dai, F., Han, Y., Li, H., Li, X., Lin, C., McCooke, J. K., Tan, C., Wang, P., Wang, S., Yin, S., Zhou, G., Poland, J. A., Bellgard, M. I., Borisjuk, L., Houben, A., Doležel, J., Ayling, S., Lonardi, S., Kersey, P., Langridge, P., Muehlbauer, G. J., Clark, M. D., Caccamo, M., Schulman, A. H., Mayer, K. F. X., Platzer, M., Close, T. J., Scholz, U., Hansson, M., Zhang, G., Braumann, I., Spannagl, M., Li, C., Waugh, R., & Stein, N.

Nature     |    04.26.2017

A Consensus Map in Cultivated Hexaploid Oat Reveals Conserved Grass Synteny with Substantial Subgenome Rearrangement

Chaffin, A. S., Huang, Y.-F., Smith, S., Bekele, W. A., Babiker, E., Gnanesh, B. N., Foresman, B. J., Blanchard, S. G., Jay, J. J., Reid, R. W., Wight, C. P., Chao, S., Oliver, R., Islamovic, E., Kolb, F. L., McCartney, C., Mitchell Fetch, J. W., Beattie, A. D., Bjørnstad, Å., Bonman, J. M., Langdon, T., Howarth, C. J., Brouwer, C. R., Jellen, E. N., Klos, K. E., Poland, J. A., Hsieh, T.-F., Brown, R., Jackson, E., Schlueter, J. A., & Tinker, N. A.

The Plant Genome    |    07.01.2016

A Whole-Genome, Radiation Hybrid Mapping Resource of Hexaploid Wheat

Tiwari, V. K., Heesacker, A., Riera-Lizarazu, O., Gunn, H., Wang, S., Wang, Y., Gu, Y. Q., Paux, E., Koo, D.-H., Kumar, A., Luo, M.-C., Lazo, G., Zemetra, R., Akhunov, E., Friebe, B., Poland, J., Gill, B. S., Kianian, S., & Leonard, J. M.

The Plant Journal    |    04.01.2016

A Pipeline Strategy for Grain Crop Domestication

DeHaan, L. R., Van Tassel, D. L., Anderson, J. A., Asselin, S. R., Barnes, R., Baute, G. J., Cattani, D. J., Culman, S. W., Dorn, K. M., Hulke, B. S., Kantar, M., Larson, S., Marks, M. D., Miller, A. J., Poland, J., Ravetta, D. A., Rude, E., Ryan, M. R., Wyse, D., & Zhang, X.

Crop Science    |    03.11.2016

Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.

Hulse-Kemp, A. M., Lemm, J., Plieske, J., Ashrafi, H., Buyyarapu, R., Fang, D. D., Frelichowski, J., Giband, M., Hague, S., Hinze, L. L., Kochan, K. J., Riggs, P. K., Scheffler, J. A., Udall, J. A., Ulloa, M., Wang, S. S., Zhu, Q.-H., Bag, S. K., Bhardwaj, A., Burke, J. J., Byers, R. L., Claverie, M., Gore, M. A., Harker, D. B., Islam, M. S., Jenkins, J. N., Jones, D. C., Lacape, J.-M., Llewellyn, D. J., Percy, R. G., Pepper, A. E., Poland, J. A., Mohan Rai, K., Sawant, S. V., Singh, S. K., Spriggs, A., Taylor, J. M., Wang, F., Yourstone, S. M., Zheng, X., Lawley, C. T., Ganal, M. W., Van Deynze, A., Wilson, I. W., & Stelly, D. M.

G3: Genes|Genomes|Genetics     |    06.01.2015

A SNP Genotyping Array for Hexaploid Oat

Tinker, N. A., Chao, S., Lazo, G. R., Oliver, R. E., Huang, Y.-F., Poland, J. A., Jellen, E. N., Maughan, P. J., Kilian, A., & Jackson, E. W.

The Plant Genome    |    03.10.2014

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